MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.31384949814484303
cnr4.067141731539611
efc0.6010552645323743
fber77.04547119140625
fwhmavg4.040073333333333
fwhmx3.83643
fwhmy4.35572
fwhmz3.92807
icvscsf0.20059744386245137
icvsgm0.47164191663734756
icvswm0.327760639500201
inumed1.0773733854293823
inurange0.39184755086898804
qi10.0
qi20.0009554595224148439
rpvecsf25.61570463273966
rpvegm12.228073813415971
rpvewm19.586223906253135
sizex180
sizey256
sizez256
snrcsf2.3273497719980236
snrgm10.455794361685287
snrtotal9.642612120064895
snrwm16.14469222651137
snrdcsf9.991994313366284
snrdgm24.026204230648016
snrdtotal23.91681904756852
snrdwm37.73225859869125
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.7428098222964445
summarybgmad17.36309242248535
summarybgmean59.54886245727539
summarybgmedian56.184913635253906
summarybgn2427845.0
summarybgp0533.019968414306646
summarybgp9598.80761413574218
summarybgstdv20.77155113220215
summarycsfk0.766461362473875
summarycsfmad108.86875915527344
summarycsfmean283.8791198730469
summarycsfmedian264.8180236816406
summarycsfn14669.0
summarycsfp05132.24632568359374
summarycsfp95492.16879272460926
summarycsfstdv113.7813491821289
summarygmk0.2647236621407165
summarygmmad58.73517608642578
summarygmmean639.0759887695312
summarygmmedian636.7669677734375
summarygmn41896.0
summarygmp05542.7949371337891
summarygmp95743.7073364257812
summarygmstdv60.900142669677734
summarywmk1.0672121040714755
summarywmmad55.2712287902832
summarywmmean999.5441284179688
summarywmmedian1000.018798828125
summarywmn168142.0
summarywmp05895.3495880126953
summarywmp951098.7324523925781
summarywmstdv61.94084167480469
tpmoverlapcsf0.21951258182525635
tpmoverlapgm0.5379757285118103
tpmoverlapwm0.5481094121932983
wm2max0.6542730224278118

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum13f6f2a759e6b2738ad1e90f07039532
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.