MRIQC: individual T1w report

Summary

Subject ID: 026_ControlPre.
Date and time: 2018-05-06, 21:44.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.31384949814484303
cnr			4.067141731539611
efc			0.6010552645323743
fber			77.04547119140625
fwhm	avg		4.040073333333333
fwhm	x		3.83643
fwhm	y		4.35572
fwhm	z		3.92807
icvs	csf		0.20059744386245137
icvs	gm		0.47164191663734756
icvs	wm		0.327760639500201
inu	med		1.0773733854293823
inu	range		0.39184755086898804
qi	1		0.0
qi	2		0.0009554595224148439
rpve	csf		25.61570463273966
rpve	gm		12.228073813415971
rpve	wm		19.586223906253135
size	x		180
size	y		256
size	z		256
snr	csf		2.3273497719980236
snr	gm		10.455794361685287
snr	total		9.642612120064895
snr	wm		16.14469222651137
snrd	csf		9.991994313366284
snrd	gm		24.026204230648016
snrd	total		23.91681904756852
snrd	wm		37.73225859869125
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.7428098222964445
summary	bg	mad	17.36309242248535
summary	bg	mean	59.54886245727539
summary	bg	median	56.184913635253906
summary	bg	n	2427845.0
summary	bg	p05	33.019968414306646
summary	bg	p95	98.80761413574218
summary	bg	stdv	20.77155113220215
summary	csf	k	0.766461362473875
summary	csf	mad	108.86875915527344
summary	csf	mean	283.8791198730469
summary	csf	median	264.8180236816406
summary	csf	n	14669.0
summary	csf	p05	132.24632568359374
summary	csf	p95	492.16879272460926
summary	csf	stdv	113.7813491821289
summary	gm	k	0.2647236621407165
summary	gm	mad	58.73517608642578
summary	gm	mean	639.0759887695312
summary	gm	median	636.7669677734375
summary	gm	n	41896.0
summary	gm	p05	542.7949371337891
summary	gm	p95	743.7073364257812
summary	gm	stdv	60.900142669677734
summary	wm	k	1.0672121040714755
summary	wm	mad	55.2712287902832
summary	wm	mean	999.5441284179688
summary	wm	median	1000.018798828125
summary	wm	n	168142.0
summary	wm	p05	895.3495880126953
summary	wm	p95	1098.7324523925781
summary	wm	stdv	61.94084167480469
tpm	overlap	csf	0.21951258182525635
tpm	overlap	gm	0.5379757285118103
tpm	overlap	wm	0.5481094121932983
wm2max			0.6542730224278118

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	13f6f2a759e6b2738ad1e90f07039532
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.